title: Execution Layer Restoration

insight: The execution layer file was deleted from working tree but dependencies were never created in git - required dual recovery: restore from HEAD + create missing files from scratch

reasoning_chain: Restored from git HEAD - compiles cleanly

reasoning_chain: Import chain failed - dependencies never existed in git

reasoning_chain: Created gemini_rate_maximizer.py and gemini_executor.py from scratch

reasoning_chain: Fixed hardcoded Windows paths to relative paths for WSL compatibility

source_context: The execution layer file was deleted (shown in git status as D core/genesis_execution_layer.py). The dependencies (gemini_rate_maximizer.py, gemini_executor.py) never existed in git - they were referenced but never created.


title: Cross-Platform Path Resolution

insight: Replaced hardcoded Windows paths with relative Path(__file__) resolution for WSL compatibility

reasoning_chain: Changed both to Path(__file__).parent.parent / subpath

source_context: The path format is wrong for WSL. Let me fix the secrets path.


title: Parallel PRD Story Execution

insight: Executed multiple PRD stories in parallel using background agents for efficiency

reasoning_chain: Stories 25, 27, 28, 29 sent to background agents

reasoning_chain: Background agents completed with detailed findings

reasoning_chain: All stories integrated into final readiness report

source_context: Now let me execute Stories 24-29 in parallel using background agents.


title: Skill-Agent Mapping Gap

insight: 43% of skills are orphaned - not assigned to any agent, limiting fleet capability utilization

reasoning_chain: Skill-agent mapping audit found 30 total skills

reasoning_chain: Opus 4.6 features (adaptive-thinking, opus-46-migration) unassigned

reasoning_chain: parallel-builder lacks self-correction and git-worktrees skills

source_context: 13 skills (43%) are completely orphaned. Average skills per agent: 2.1 skills (very low).


title: Hook System Security Gap

insight: C: drive protection and SQLite blocking were missing from the safety hook system

reasoning_chain: Hook system audit identified missing checks

reasoning_chain: C: drive writes not blocked (security risk)

reasoning_chain: SQLite operations not blocked (data integrity risk)

reasoning_chain: Added check_c_drive_protection() and check_sqlite_blocked()

reasoning_chain: Now 4 total safety checks in pre_tool_check.py

source_context: The hooks audit found C: drive protection and SQLite blocking are missing from pre_tool_check.py. Let me fix that.


title: Task/RWL Complementarity

insight: Native Tasks coordinate WHAT to execute while RWL Loops handle HOW via Gemini swarm - complementary systems

reasoning_chain: Story 24 required documenting native task integration

reasoning_chain: Native Tasks use TaskCreate/TaskUpdate DAG

reasoning_chain: RWL Loops use Ralph Wiggum decomposition + verification

reasoning_chain: Task is the coordination layer, RWL is execution layer

reasoning_chain: Updated /status command to show both systems

source_context: The key deliverable is documenting how native tasks complement RWL loops.


title: Context Window Strategy Update

insight: Updated context command for Opus 4.6's 1M token window with tiered pricing and compaction strategy

reasoning_chain: Added tiered pricing table (Haiku $0.075 → Pro $3.50)

reasoning_chain: Documented 78K premature compaction workaround

source_context: Now let me update the /context command for Opus 4.6's 1M context window (Story 26) and update CLAUDE.md context thresholds.


title: Agent Teams Activation

insight: Enabled Agent Teams feature via environment variable in both settings files for multi-session coordination

reasoning_chain: Story 25 required Agent Teams activation

reasoning_chain: Added env section to settings.local.json

source_context: Agent Teams activation confirmed - env var set in both settings files.


title: KG Scale Validation

insight: Knowledge graph validated at scale - 62,920 entries with 100% JSON validity

reasoning_chain: 9 minor orphaned references (non-blocking)

source_context: 62,920 entries, 100% JSON validity, 0 critical issues


title: Hyperstack Operational Baseline

insight: Genesis transitioned from restoration mode to operational hyperstack baseline - all 35 PRD stories complete

reasoning_chain: Phase 1-3 completed in prior session (Stories 1-22)

reasoning_chain: Phase 4-5 completed in this session (Stories 23-35)

reasoning_chain: All blockers resolved in readiness report

reasoning_chain: System health: ALL GREEN across 8 subsystems

source_context: Genesis is now operating at the Opus 4.6 Hyperstack baseline with all 35 PRD stories complete.